Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbir_1069Hypothetical protein. (257 aa)    
Predicted Functional Partners:
Lbir_1802
Flavin containing amine oxidoreductase.
 
     0.851
Lbir_1070
Membrane protein.
 
     0.732
yfhG
Lipoprotein.
 
     0.675
cadA
Cation transport ATPase.
       0.525
Lbir_0261
Streptomycin 3''-adenylyltransferase; Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
  
     0.452
Lbir_1429
Hypothetical protein.
  
     0.431
Lbir_3053
Coiled-coil protein.
  
     0.423
Lbir_0690
Oxidoreductase.
  
     0.410
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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