Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Lbir_2018Hypothetical protein. (96 aa)    
Predicted Functional Partners:
lapB
Tetratricopeptide repeat protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
 
   
 0.734
Lbir_1273
Hypothetical protein.
  
     0.697
lspI
Type II secretory pathway protein LspI.
  
     0.696
arp_1-2
Ankyrin repeat domain-containing protein.
  
     0.683
Lbir_2714
IcmJ protein.
  
     0.664
dotA
Defect in organelle trafficking protein DotA.
  
     0.652
enhA_3
Enhanced entry protein EnhA.
  
     0.631
enhA_1
Enhanced entry protein EnhA.
  
     0.616
Lbir_2422
Hypothetical protein.
  
     0.613
yghD
Putative general secretion pathway protein YghD.
  
     0.609
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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