Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lbir_2136Phosphotransferase enzyme family protein. (246 aa)    
Predicted Functional Partners:
secA_4
Coiled-coil protein.
  
     0.763
Lbir_3053
Coiled-coil protein.
  
     0.763
secA_5
Coiled-coil protein.
  
     0.753
Lbir_1429
Hypothetical protein.
  
     0.753
Lbir_0261
Streptomycin 3''-adenylyltransferase; Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
  
     0.751
Lbir_2193
Phosphotransferase enzyme family protein.
  
     0.747
traI_1
TraI protein.
  
     0.740
trbJ_1
Conjugal transfer protein TrbJ.
  
     0.740
Lbir_0249
Hypothetical protein.
  
     0.703
Lbir_0285
Hypothetical protein.
  
     0.699
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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