Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbir_2225 | phbC | Lbir_2225 | Lbir_2224 | Hypothetical protein. | Polyhydroxyalkanoic synthase. | 0.689 |
Lbir_2225 | yveA | Lbir_2225 | Lbir_2226 | Hypothetical protein. | Aspartate-proton symporter. | 0.531 |
Lbir_2720 | Lbir_2723 | Lbir_2720 | Lbir_2723 | Protein IcmL (DotI). | Protein IcmO (DotL). | 0.878 |
Lbir_2720 | dotC | Lbir_2720 | Lbir_0119 | Protein IcmL (DotI). | Defect in organelle trafficking lipoprotein DotC. | 0.774 |
Lbir_2720 | yveA | Lbir_2720 | Lbir_2226 | Protein IcmL (DotI). | Aspartate-proton symporter. | 0.494 |
Lbir_2723 | Lbir_2720 | Lbir_2723 | Lbir_2720 | Protein IcmO (DotL). | Protein IcmL (DotI). | 0.878 |
Lbir_2723 | dotC | Lbir_2723 | Lbir_0119 | Protein IcmO (DotL). | Defect in organelle trafficking lipoprotein DotC. | 0.814 |
Lbir_2723 | yveA | Lbir_2723 | Lbir_2226 | Protein IcmO (DotL). | Aspartate-proton symporter. | 0.424 |
aml | glgE1 | Lbir_2954 | Lbir_2948 | Alpha-amylase precursor. | Alpha-amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | 0.590 |
aml | treS | Lbir_2954 | Lbir_2949 | Alpha-amylase precursor. | Trehalose synthase/amylase TreS. | 0.940 |
aml | yveA | Lbir_2954 | Lbir_2226 | Alpha-amylase precursor. | Aspartate-proton symporter. | 0.888 |
dltA | nadE | Lbir_2990 | Lbir_2656 | Non-ribosomal peptide synthetase/polyketide synthetase. | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.602 |
dltA | yveA | Lbir_2990 | Lbir_2226 | Non-ribosomal peptide synthetase/polyketide synthetase. | Aspartate-proton symporter. | 0.542 |
dotC | Lbir_2720 | Lbir_0119 | Lbir_2720 | Defect in organelle trafficking lipoprotein DotC. | Protein IcmL (DotI). | 0.774 |
dotC | Lbir_2723 | Lbir_0119 | Lbir_2723 | Defect in organelle trafficking lipoprotein DotC. | Protein IcmO (DotL). | 0.814 |
dotC | yveA | Lbir_0119 | Lbir_2226 | Defect in organelle trafficking lipoprotein DotC. | Aspartate-proton symporter. | 0.486 |
glgE1 | aml | Lbir_2948 | Lbir_2954 | Alpha-amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | Alpha-amylase precursor. | 0.590 |
glgE1 | treS | Lbir_2948 | Lbir_2949 | Alpha-amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | Trehalose synthase/amylase TreS. | 0.997 |
glgE1 | yveA | Lbir_2948 | Lbir_2226 | Alpha-amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | Aspartate-proton symporter. | 0.888 |
nadE | dltA | Lbir_2656 | Lbir_2990 | Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Non-ribosomal peptide synthetase/polyketide synthetase. | 0.602 |
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