Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbir_2403 | lgt | Lbir_2403 | Lbir_2402 | Permease. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.758 |
Lbir_2403 | ptsP | Lbir_2403 | Lbir_2404 | Permease. | Phosphoenolpyruvate-protein phosphotransferase PtsP; Belongs to the PEP-utilizing enzyme family. | 0.805 |
Lbir_2403 | rppH | Lbir_2403 | Lbir_2405 | Permease. | Dinucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.805 |
Lbir_2403 | thyA | Lbir_2403 | Lbir_2401 | Permease. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.760 |
Lbir_2622 | cyaA_2 | Lbir_2622 | Lbir_2467 | Sensory box/GGDEF family protein. | Guanylate cyclase. | 0.886 |
Lbir_2622 | gmr_2 | Lbir_2622 | Lbir_0726 | Sensory box/GGDEF family protein. | GGDEF domain-containing sensory box protein. | 0.999 |
Lbir_2622 | phoR | Lbir_2622 | Lbir_0744 | Sensory box/GGDEF family protein. | Sensory box histidine kinase/response regulator. | 0.999 |
Lbir_2622 | ptsH | Lbir_2622 | Lbir_0408 | Sensory box/GGDEF family protein. | Sugar transport PTS system phosphocarrier HPr protein. | 0.441 |
Lbir_2622 | ptsP | Lbir_2622 | Lbir_2404 | Sensory box/GGDEF family protein. | Phosphoenolpyruvate-protein phosphotransferase PtsP; Belongs to the PEP-utilizing enzyme family. | 0.714 |
Lbir_2622 | rppH | Lbir_2622 | Lbir_2405 | Sensory box/GGDEF family protein. | Dinucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.653 |
cyaA_2 | Lbir_2622 | Lbir_2467 | Lbir_2622 | Guanylate cyclase. | Sensory box/GGDEF family protein. | 0.886 |
cyaA_2 | gmr_2 | Lbir_2467 | Lbir_0726 | Guanylate cyclase. | GGDEF domain-containing sensory box protein. | 0.834 |
cyaA_2 | phoR | Lbir_2467 | Lbir_0744 | Guanylate cyclase. | Sensory box histidine kinase/response regulator. | 0.956 |
cyaA_2 | ptsP | Lbir_2467 | Lbir_2404 | Guanylate cyclase. | Phosphoenolpyruvate-protein phosphotransferase PtsP; Belongs to the PEP-utilizing enzyme family. | 0.680 |
gmr_2 | Lbir_2622 | Lbir_0726 | Lbir_2622 | GGDEF domain-containing sensory box protein. | Sensory box/GGDEF family protein. | 0.999 |
gmr_2 | cyaA_2 | Lbir_0726 | Lbir_2467 | GGDEF domain-containing sensory box protein. | Guanylate cyclase. | 0.834 |
gmr_2 | phoR | Lbir_0726 | Lbir_0744 | GGDEF domain-containing sensory box protein. | Sensory box histidine kinase/response regulator. | 0.999 |
gmr_2 | ptsH | Lbir_0726 | Lbir_0408 | GGDEF domain-containing sensory box protein. | Sugar transport PTS system phosphocarrier HPr protein. | 0.460 |
gmr_2 | ptsP | Lbir_0726 | Lbir_2404 | GGDEF domain-containing sensory box protein. | Phosphoenolpyruvate-protein phosphotransferase PtsP; Belongs to the PEP-utilizing enzyme family. | 0.624 |
gmr_2 | rppH | Lbir_0726 | Lbir_2405 | GGDEF domain-containing sensory box protein. | Dinucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.453 |
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