STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtxA-2_2Structural toxin protein RtxA. (700 aa)    
Predicted Functional Partners:
tesA
Esterase TesA precursor.
   
 0.920
Lbir_2049
Putative transporter.
   
    0.792
rtxA-2_3
Structural toxin protein RtxA.
  
 
  0.757
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.696
Lbir_1686
Hypothetical protein.
  
 
 0.619
aprE
Serine metalloprotease; Belongs to the peptidase S8 family.
  
 
 0.576
Lbir_1911
Glycosyl transferase family 2.
    
 0.553
apxIB_3
Toxin secretion ATP binding protein.
  
     0.550
egl
Endoglucanase precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.520
lssD
Secretion system protein D.
 
     0.500
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.