Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbir_2944 | Lbir_2946 | Lbir_2944 | Lbir_2946 | Acyltransferase. | L-sorbosone dehydrogenase. | 0.443 |
Lbir_2944 | cyaA_1 | Lbir_2944 | Lbir_2945 | Acyltransferase. | Adenylate cyclase. | 0.470 |
Lbir_2946 | Lbir_2944 | Lbir_2946 | Lbir_2944 | L-sorbosone dehydrogenase. | Acyltransferase. | 0.443 |
Lbir_2946 | cyaA_1 | Lbir_2946 | Lbir_2945 | L-sorbosone dehydrogenase. | Adenylate cyclase. | 0.723 |
Lbir_2946 | cyc4 | Lbir_2946 | Lbir_0468 | L-sorbosone dehydrogenase. | Cytochrome c4. | 0.458 |
Lbir_2946 | gap | Lbir_2946 | Lbir_0936 | L-sorbosone dehydrogenase. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.576 |
Lbir_2946 | pdhA | Lbir_2946 | Lbir_0596 | L-sorbosone dehydrogenase. | Pyruvate dehydrogenase e1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). | 0.479 |
Lbir_2946 | pdhB_1 | Lbir_2946 | Lbir_1298 | L-sorbosone dehydrogenase. | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.659 |
Lbir_2946 | ppsA_1 | Lbir_2946 | Lbir_0063 | L-sorbosone dehydrogenase. | Phosphoenolpyruvate synthase. | 0.510 |
Lbir_2946 | rhsA | Lbir_2946 | Lbir_3074 | L-sorbosone dehydrogenase. | Putative deoxyribonuclease RhsA. | 0.450 |
Lbir_2946 | tpiA | Lbir_2946 | Lbir_1218 | L-sorbosone dehydrogenase. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.582 |
Lbir_2946 | xynY | Lbir_2946 | Lbir_0050 | L-sorbosone dehydrogenase. | Putative secreted esterase. | 0.578 |
cyaA_1 | Lbir_2944 | Lbir_2945 | Lbir_2944 | Adenylate cyclase. | Acyltransferase. | 0.470 |
cyaA_1 | Lbir_2946 | Lbir_2945 | Lbir_2946 | Adenylate cyclase. | L-sorbosone dehydrogenase. | 0.723 |
cyc4 | Lbir_2946 | Lbir_0468 | Lbir_2946 | Cytochrome c4. | L-sorbosone dehydrogenase. | 0.458 |
cyc4 | gap | Lbir_0468 | Lbir_0936 | Cytochrome c4. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.455 |
gap | Lbir_2946 | Lbir_0936 | Lbir_2946 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | L-sorbosone dehydrogenase. | 0.576 |
gap | cyc4 | Lbir_0936 | Lbir_0468 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Cytochrome c4. | 0.455 |
gap | pdhB_1 | Lbir_0936 | Lbir_1298 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.757 |
gap | tpiA | Lbir_0936 | Lbir_1218 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.999 |
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