Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
traEType IV conjugative transfer system protein TraE. (189 aa)    
Predicted Functional Partners:
Lche_0024
Conjugative transfer protein TraB.
 
     0.951
traL
Type IV conjugative transfer system protein TraL, proteobacteria.
       0.838
Lche_0028
Hypothetical protein.
       0.825
Lche_0788
Conjugal pilus assembly protein TraF.
 
   
 0.803
Lche_0025
Conjugative transfer protein TraK.
     
 0.787
Lche_0781
Conjugative transfer protein TraB.
 
     0.787
traG
Mating contact stabilization protein TraG.
 
     0.772
Lche_2139
Protein TraN.
 
     0.769
traH_2
Protein TraH.
 
   
 0.768
Lche_2146
Putative conjugative transfer protein TraB.
 
     0.768
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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