STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0040Trans-aconitate 2-methyltransferase. (245 aa)    
Predicted Functional Partners:
Lche_0229
Transporter family transporter protein.
  
     0.760
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.757
Lche_0535
Hypothetical protein.
 
  
 0.741
SseJ_2
Phospholipase/lecithinase/hemolysin.
  
     0.730
Lche_0524
Dihydroorotate dehydrogenase electron transfer subunit.
 
     0.711
fabA
3-hydroxymyristoyl-ACP dehydratase.
 
   
 0.685
Lche_2559
Pyoverdine biosynthesis regulatory protein SyrP-like protein.
  
    0.662
Lche_2573
Multidrug efflux protein.
  
     0.662
Lche_2996
RasGEF domain protein.
  
     0.656
Lche_3100
Hypothetical protein.
  
     0.642
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.