Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lche_0041Putative endonuclease-1. (241 aa)    
Predicted Functional Partners:
Lche_1100
Inner membrane protein.
  
     0.561
Lche_0524
Dihydroorotate dehydrogenase electron transfer subunit.
  
     0.531
Lche_0040
Trans-aconitate 2-methyltransferase.
 
     0.526
Lche_0535
Hypothetical protein.
  
     0.516
Lche_2573
Multidrug efflux protein.
  
     0.484
Lche_0044
UmuC.
   
   0.445
cadA_1
Lysine decarboxylase, inducible.
  
     0.443
yedK_1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
       0.428
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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