Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pacLCation efflux transporter. (906 aa)    
Predicted Functional Partners:
Lche_0056
Putative conserved hypothetical protein, some similarity with stress proteins.
  
  
 0.833
Lche_0899
Hypothetical protein; Belongs to the UPF0276 family.
   
    0.599
lvhB3
Type IV secretion system protein VirB3.
   
    0.573
Lche_1675
Signal peptide protein.
   
    0.516
Lche_0057
Tn3 transposase DDE domain protein.
       0.489
Lche_0801
Hypothetical protein.
    
 
 0.432
pksJ_1
Polyketide synthase, type I.
  
 
 0.421
Lche_1834
acyl-CoA synthetase.
  
 
 0.421
Lche_2715
acyl-CoA synthetase.
  
 
 0.421
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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