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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0070Multidrug resistance ABC transporter ATP binding protein. (603 aa)    
Predicted Functional Partners:
uup_1
ABC transporter ATP-binding protein Uup.
 
 
 0.921
Lche_0075
ATPase.
 
     0.844
Lche_0073
GNAT family acetyltransferase.
 
     0.843
Lche_0071
Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
 
     0.841
Lche_0074
Hypothetical protein.
 
     0.828
grpB
Glutamate rich protein GrpB.
       0.800
LagD
Toxin secretion ABC transporter ATP-binding protein.
   
 
 0.741
Lche_2125
ATP-binding transmembrane ABC transporter.
  
 
0.658
Lche_2124
ABC transporter ATP binding transmembrane protein.
  
 
0.649
pksJ_1
Polyketide synthase, type I.
  
 0.634
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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