STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0116Muramoyltetrapeptide carboxypeptidase. (297 aa)    
Predicted Functional Partners:
Lche_0117
Methyltransferase.
       0.782
Lche_0118
GNAT family acetyltransferase.
       0.758
Lche_0119
Hypothetical protein.
       0.719
Lche_0115
Hypothetical protein.
       0.663
Lche_0113
Aminoalkylphosphonic acid N-acetyltransferase.
  
    0.656
Lche_0114
N-acetyltransferase GCN5.
  
    0.646
Lche_0111
Putative aminoglycoside phosphotransferase.
       0.643
Lche_0112
N-acetyltransferase GCN5.
  
    0.636
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.
    
 0.549
yueD_1
Sepiapterin reductase.
       0.496
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.