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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0133Initiator Replication protein. (393 aa)    
Predicted Functional Partners:
parB_3
Putative chromosome-partitioning protein ParB.
 
     0.824
parB_2
Chromosome partitioning protein ParB; Belongs to the ParB family.
       0.785
Lche_2120
Major facilitator family transporter.
  
     0.752
traE
Type IV conjugative transfer system protein TraE.
  
     0.743
Lche_0136
Putative chromosome partitioning protein ParA.
 
     0.742
thiS
Thiamine biosynthesis protein ThiS.
  
     0.726
Lche_0544
Calcium-transporting ATPase.
  
     0.716
Lche_2153
Protein LvrA.
  
     0.700
Lche_2502
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
     0.700
Lche_0134
Hypothetical protein.
       0.697
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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