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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0141Hypothetical protein. (297 aa)    
Predicted Functional Partners:
Lche_0139
Sensor histidine kinase.
 
 
   0.860
Lche_0142
Hypothetical protein.
  
    0.801
Lche_0138
Hypothetical protein.
       0.800
Lche_0140
Hypothetical protein.
       0.800
Pip_1
Proline iminopeptidase; Belongs to the peptidase S33 family.
  
     0.764
Lche_3036
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.621
pksJ_1
Polyketide synthase, type I.
  
 
 0.589
Lche_1834
acyl-CoA synthetase.
  
 
 0.589
Lche_2715
acyl-CoA synthetase.
  
 
 0.589
pip
Proline iminopeptidase.
  
     0.569
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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