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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylpA_2Lipoprotein YlpA precursor. (104 aa)    
Predicted Functional Partners:
Lche_0160
Putative conjugative transfer protein TrbC.
 
     0.637
Lche_0781
Conjugative transfer protein TraB.
 
     0.588
traG
Mating contact stabilization protein TraG.
 
     0.586
Lche_0148
Hypothetical protein.
       0.581
Lche_0161
Conjugal transfer mating pair stabilization protein TraN.
 
     0.581
Lche_0024
Conjugative transfer protein TraB.
 
     0.548
Lche_0154
Putative conjugative transfer protein TraB.
 
     0.547
Lche_2132
TraI.
 
     0.534
Lche_0165
Putative sex pilus assembly and mating pair protein TraG.
 
     0.525
Lche_2139
Protein TraN.
 
     0.515
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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