Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BdhA | Lche_0219 | Lche_0383 | Lche_0219 | 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | O-methyltransferase. | 0.751 |
BdhA | Lche_2506 | Lche_0383 | Lche_2506 | 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | acyl-CoA synthetase. | 0.545 |
BdhA | pksJ_1 | Lche_0383 | Lche_0504 | 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Polyketide synthase, type I. | 0.512 |
Lche_0062 | Lche_0219 | Lche_0062 | Lche_0219 | Acetyoacetyl CoA reductase. | O-methyltransferase. | 0.690 |
Lche_0062 | Lche_2506 | Lche_0062 | Lche_2506 | Acetyoacetyl CoA reductase. | acyl-CoA synthetase. | 0.545 |
Lche_0062 | pksJ_1 | Lche_0062 | Lche_0504 | Acetyoacetyl CoA reductase. | Polyketide synthase, type I. | 0.512 |
Lche_0219 | BdhA | Lche_0219 | Lche_0383 | O-methyltransferase. | 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.751 |
Lche_0219 | Lche_0062 | Lche_0219 | Lche_0062 | O-methyltransferase. | Acetyoacetyl CoA reductase. | 0.690 |
Lche_0219 | Lche_2155 | Lche_0219 | Lche_2155 | O-methyltransferase. | Acetyoacetyl CoA reductase. | 0.556 |
Lche_0219 | Lche_2506 | Lche_0219 | Lche_2506 | O-methyltransferase. | acyl-CoA synthetase. | 0.582 |
Lche_0219 | fabG_1 | Lche_0219 | Lche_0465 | O-methyltransferase. | 3-oxoacyl-ACP reductase. | 0.577 |
Lche_0219 | fabG_2 | Lche_0219 | Lche_0466 | O-methyltransferase. | 3-oxoacyl-ACP reductase. | 0.702 |
Lche_0219 | fabG_3 | Lche_0219 | Lche_1765 | O-methyltransferase. | 3-oxoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.638 |
Lche_0219 | phaB_1 | Lche_0219 | Lche_1572 | O-methyltransferase. | Acetyoacetyl CoA reductase. | 0.596 |
Lche_0219 | phaB_3 | Lche_0219 | Lche_2368 | O-methyltransferase. | Acetyoacetyl CoA reductase. | 0.680 |
Lche_0219 | pksJ_1 | Lche_0219 | Lche_0504 | O-methyltransferase. | Polyketide synthase, type I. | 0.595 |
Lche_2155 | Lche_0219 | Lche_2155 | Lche_0219 | Acetyoacetyl CoA reductase. | O-methyltransferase. | 0.556 |
Lche_2155 | Lche_2506 | Lche_2155 | Lche_2506 | Acetyoacetyl CoA reductase. | acyl-CoA synthetase. | 0.545 |
Lche_2155 | pksJ_1 | Lche_2155 | Lche_0504 | Acetyoacetyl CoA reductase. | Polyketide synthase, type I. | 0.512 |
Lche_2506 | BdhA | Lche_2506 | Lche_0383 | acyl-CoA synthetase. | 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.545 |
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