STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_03515-carboxyvanillate decarboxylase. (321 aa)    
Predicted Functional Partners:
Lche_3121
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.597
Lche_3179
FAD monooxygenase.
 
  
 0.588
pksJ_1
Polyketide synthase, type I.
 
  
 0.496
cocE
Cocaine esterase.
  
   
 0.486
Lche_0602
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.480
Lche_1019
(2-pyrone-4,6-)dicarboxylic acid hydrolase.
 
   
 0.468
Lche_0350
Integral membrane protein.
       0.463
Lche_0352
Carboxymuconolactone decarboxylase family protein.
       0.461
Lche_0883
Hypothetical protein.
 
  
 0.460
Pcp_2
Serine protease, subtilase family.
  
     0.450
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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