Lche_0372 protein (Legionella cherrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lche_0372

LysM domain-containing protein. (345 aa)

Predicted Functional Partners:

pilQ

0.965

pilO

0.897

pilN

0.895

Lche_0370

0.838

smf

0.838

pilZ_1

0.785

pilP

0.774

topA

0.770

fimV_1

0.763

pilE_2

0.754

Your Current Organism:

Legionella cherrii

NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lche_0370	Lche_0372	Lche_0370	Lche_0372	Hypothetical protein.	LysM domain-containing protein.	0.838
Lche_0370	smf	Lche_0370	Lche_0371	Hypothetical protein.	Protein smf.	0.838
Lche_0370	topA	Lche_0370	Lche_0369	Hypothetical protein.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.733
Lche_0372	Lche_0370	Lche_0372	Lche_0370	LysM domain-containing protein.	Hypothetical protein.	0.838
Lche_0372	fimV_1	Lche_0372	Lche_1313	LysM domain-containing protein.	FimV protein.	0.763
Lche_0372	pilE_2	Lche_0372	Lche_2483	LysM domain-containing protein.	Type-IV pilin.	0.754
Lche_0372	pilN	Lche_0372	Lche_1029	LysM domain-containing protein.	Tfp pilus assembly protein PilN.	0.895
Lche_0372	pilO	Lche_0372	Lche_1030	LysM domain-containing protein.	Tfp pilus assembly protein PilO.	0.897
Lche_0372	pilP	Lche_0372	Lche_1031	LysM domain-containing protein.	Tfp pilus assembly protein PilP.	0.774
Lche_0372	pilQ	Lche_0372	Lche_1032	LysM domain-containing protein.	Type IV pilus (Tfp) assembly protein PilQ.	0.965
Lche_0372	pilZ_1	Lche_0372	Lche_1759	LysM domain-containing protein.	Type 4 fimbrial biogenesis protein PilZ.	0.785
Lche_0372	smf	Lche_0372	Lche_0371	LysM domain-containing protein.	Protein smf.	0.838
Lche_0372	topA	Lche_0372	Lche_0369	LysM domain-containing protein.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.770
fimV_1	Lche_0372	Lche_1313	Lche_0372	FimV protein.	LysM domain-containing protein.	0.763
fimV_1	pilE_2	Lche_1313	Lche_2483	FimV protein.	Type-IV pilin.	0.565
fimV_1	pilN	Lche_1313	Lche_1029	FimV protein.	Tfp pilus assembly protein PilN.	0.790
fimV_1	pilO	Lche_1313	Lche_1030	FimV protein.	Tfp pilus assembly protein PilO.	0.787
fimV_1	pilP	Lche_1313	Lche_1031	FimV protein.	Tfp pilus assembly protein PilP.	0.771
fimV_1	pilQ	Lche_1313	Lche_1032	FimV protein.	Type IV pilus (Tfp) assembly protein PilQ.	0.675
fimV_1	pilZ_1	Lche_1313	Lche_1759	FimV protein.	Type 4 fimbrial biogenesis protein PilZ.	0.755