STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0372LysM domain-containing protein. (345 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 
 0.980
pilN
Tfp pilus assembly protein PilN.
  
 
   0.869
pilO
Tfp pilus assembly protein PilO.
 
 
   0.869
pilP
Tfp pilus assembly protein PilP.
 
 
   0.869
Lche_0370
Hypothetical protein.
       0.800
smf
Protein smf.
       0.800
pilZ_1
Type 4 fimbrial biogenesis protein PilZ.
  
    0.781
fimV_1
FimV protein.
  
   
 0.760
pilE_2
Type-IV pilin.
  
     0.754
Lche_2482
Type 4 fimbrial biogenesis protein PilY1.
  
     0.727
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.