Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_0379 | Lche_0382 | Lche_0379 | Lche_0382 | Hypothetical protein. | Hypothetical protein. | 0.527 |
Lche_0379 | Lche_1912 | Lche_0379 | Lche_1912 | Hypothetical protein. | Hypothetical protein. | 0.441 |
Lche_0379 | bamC | Lche_0379 | Lche_0380 | Hypothetical protein. | Outer membrane protein assembly factor BamC. | 0.796 |
Lche_0379 | dapA | Lche_0379 | Lche_0381 | Hypothetical protein. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.796 |
Lche_0379 | lptC | Lche_0379 | Lche_2044 | Hypothetical protein. | Lipopolysaccharide export system protein LptC. | 0.515 |
Lche_0379 | rimK | Lche_0379 | Lche_0600 | Hypothetical protein. | Glutathione synthase, ribosomal protein S6 modification protein; Belongs to the RimK family. | 0.400 |
Lche_0382 | Lche_0379 | Lche_0382 | Lche_0379 | Hypothetical protein. | Hypothetical protein. | 0.527 |
Lche_0382 | bamC | Lche_0382 | Lche_0380 | Hypothetical protein. | Outer membrane protein assembly factor BamC. | 0.537 |
Lche_0382 | dapA | Lche_0382 | Lche_0381 | Hypothetical protein. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.541 |
Lche_1912 | Lche_0379 | Lche_1912 | Lche_0379 | Hypothetical protein. | Hypothetical protein. | 0.441 |
bamC | Lche_0379 | Lche_0380 | Lche_0379 | Outer membrane protein assembly factor BamC. | Hypothetical protein. | 0.796 |
bamC | Lche_0382 | Lche_0380 | Lche_0382 | Outer membrane protein assembly factor BamC. | Hypothetical protein. | 0.537 |
bamC | dapA | Lche_0380 | Lche_0381 | Outer membrane protein assembly factor BamC. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.800 |
dapA | Lche_0379 | Lche_0381 | Lche_0379 | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | Hypothetical protein. | 0.796 |
dapA | Lche_0382 | Lche_0381 | Lche_0382 | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | Hypothetical protein. | 0.541 |
dapA | bamC | Lche_0381 | Lche_0380 | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | Outer membrane protein assembly factor BamC. | 0.800 |
lptC | Lche_0379 | Lche_2044 | Lche_0379 | Lipopolysaccharide export system protein LptC. | Hypothetical protein. | 0.515 |
rimK | Lche_0379 | Lche_0600 | Lche_0379 | Glutathione synthase, ribosomal protein S6 modification protein; Belongs to the RimK family. | Hypothetical protein. | 0.400 |