STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YggR_1DotB. (376 aa)    
Predicted Functional Partners:
dotC
Defect in organelle trafficking lipoprotein DotC.
 
   
 0.945
dotD
Lipoprotein DotD.
     
 0.830
pilC
Pilus assembly protein PilC.
 
  
 0.792
lspF
Type II secretory pathway protein LspF.
 
  
 0.784
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.735
Lche_0626
Protein IcmO (DotL).
 
     0.693
Lche_0635
IcmJ protein.
 
     0.686
Lche_0629
Protein IcmL (DotI).
  
   
 0.673
Lche_0625
IcmP protein.
 
   
 0.671
Lche_0630
IcmK protein.
  
   
 0.621
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.