STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dotCDefect in organelle trafficking lipoprotein DotC. (308 aa)    
Predicted Functional Partners:
dotD
Lipoprotein DotD.
   
 
 0.985
Lche_0631
Protein IcmE (DotG).
  
 
 
 0.984
YggR_1
DotB.
 
   
 0.979
Lche_0630
IcmK protein.
 
 
 
 0.958
Lche_0626
Protein IcmO (DotL).
 
   
 0.868
Lche_0635
IcmJ protein.
 
  
 0.834
Lche_0629
Protein IcmL (DotI).
 
   
 0.828
Lche_0636
Protein IcmB (DotO).
 
   
 0.828
Lche_0625
IcmP protein.
 
   
 0.825
dotF
Component of the Dot/Icm secretion system.
    
 
 0.823
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.