dotD protein (Legionella cherrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dotD

Lipoprotein DotD. (157 aa)

Predicted Functional Partners:

dotC

0.985

Lche_0631

0.934

YggR_1

0.932

Lche_0630

0.823

dotF

0.822

OprF

0.776

lphA

0.769

Lche_2055

0.769

Lche_2771

0.769

yhhF

0.723

Your Current Organism:

Legionella cherrii

NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lche_0630	Lche_0631	Lche_0630	Lche_0631	IcmK protein.	Protein IcmE (DotG).	0.992
Lche_0630	Lche_2055	Lche_0630	Lche_2055	IcmK protein.	Neurogenic locus notch like protein precursor.	0.769
Lche_0630	Lche_2771	Lche_0630	Lche_2771	IcmK protein.	Hypothetical protein.	0.769
Lche_0630	OprF	Lche_0630	Lche_2425	IcmK protein.	Lipoprotein.	0.775
Lche_0630	YggR_1	Lche_0630	Lche_0419	IcmK protein.	DotB.	0.668
Lche_0630	dotC	Lche_0630	Lche_0420	IcmK protein.	Defect in organelle trafficking lipoprotein DotC.	0.958
Lche_0630	dotD	Lche_0630	Lche_0421	IcmK protein.	Lipoprotein DotD.	0.823
Lche_0630	dotF	Lche_0630	Lche_0632	IcmK protein.	Component of the Dot/Icm secretion system.	0.966
Lche_0630	lphA	Lche_0630	Lche_0627	IcmK protein.	LphA (DotK).	0.954
Lche_0631	Lche_0630	Lche_0631	Lche_0630	Protein IcmE (DotG).	IcmK protein.	0.992
Lche_0631	Lche_2055	Lche_0631	Lche_2055	Protein IcmE (DotG).	Neurogenic locus notch like protein precursor.	0.833
Lche_0631	Lche_2771	Lche_0631	Lche_2771	Protein IcmE (DotG).	Hypothetical protein.	0.833
Lche_0631	OprF	Lche_0631	Lche_2425	Protein IcmE (DotG).	Lipoprotein.	0.815
Lche_0631	YggR_1	Lche_0631	Lche_0419	Protein IcmE (DotG).	DotB.	0.741
Lche_0631	dotC	Lche_0631	Lche_0420	Protein IcmE (DotG).	Defect in organelle trafficking lipoprotein DotC.	0.984
Lche_0631	dotD	Lche_0631	Lche_0421	Protein IcmE (DotG).	Lipoprotein DotD.	0.934
Lche_0631	dotF	Lche_0631	Lche_0632	Protein IcmE (DotG).	Component of the Dot/Icm secretion system.	0.975
Lche_0631	lphA	Lche_0631	Lche_0627	Protein IcmE (DotG).	LphA (DotK).	0.965
Lche_2055	Lche_0630	Lche_2055	Lche_0630	Neurogenic locus notch like protein precursor.	IcmK protein.	0.769
Lche_2055	Lche_0631	Lche_2055	Lche_0631	Neurogenic locus notch like protein precursor.	Protein IcmE (DotG).	0.833