STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0486Ankyrin repeat protein. (247 aa)    
Predicted Functional Partners:
pksJ_1
Polyketide synthase, type I.
  
 0.896
Lche_1834
acyl-CoA synthetase.
  
 0.896
Lche_2715
acyl-CoA synthetase.
  
 0.896
Lche_3148
Ankyrin repeats (3 copies).
  
     0.747
Lche_1194
Ankyrin repeats (3 copies).
  
     0.746
Lche_1633
Ankyrin repeats (3 copies).
  
     0.742
Lche_0021
Ankyrin repeats (3 copies).
  
     0.734
Lche_1125
Ankyrin repeat protein.
  
     0.710
Lche_0335
Ankyrin repeats (3 copies).
  
     0.656
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.547
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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