Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Prs_2 | RpiB | Lche_1510 | Lche_1532 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Ribose/galactose isomerase. | 0.916 |
Prs_2 | algC | Lche_1510 | Lche_0500 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Phosphomannomutase. | 0.919 |
Prs_2 | deoB | Lche_1510 | Lche_2472 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.907 |
Prs_2 | prs | Lche_1510 | Lche_0457 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.922 |
Prs_2 | tkt | Lche_1510 | Lche_3079 | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.933 |
RpiB | Prs_2 | Lche_1532 | Lche_1510 | Ribose/galactose isomerase. | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.916 |
RpiB | algC | Lche_1532 | Lche_0500 | Ribose/galactose isomerase. | Phosphomannomutase. | 0.913 |
RpiB | deoB | Lche_1532 | Lche_2472 | Ribose/galactose isomerase. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.913 |
RpiB | pgi | Lche_1532 | Lche_1039 | Ribose/galactose isomerase. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.424 |
RpiB | prs | Lche_1532 | Lche_0457 | Ribose/galactose isomerase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.916 |
RpiB | tkt | Lche_1532 | Lche_3079 | Ribose/galactose isomerase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.941 |
algC | Prs_2 | Lche_0500 | Lche_1510 | Phosphomannomutase. | Phosphoribosylpyrophosphate synthetase; Belongs to the ribose-phosphate pyrophosphokinase family. | 0.919 |
algC | RpiB | Lche_0500 | Lche_1532 | Phosphomannomutase. | Ribose/galactose isomerase. | 0.913 |
algC | cpsB | Lche_0500 | Lche_2774 | Phosphomannomutase. | Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.977 |
algC | deoB | Lche_0500 | Lche_2472 | Phosphomannomutase. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.914 |
algC | deoC | Lche_0500 | Lche_1724 | Phosphomannomutase. | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | 0.846 |
algC | galU | Lche_0500 | Lche_1040 | Phosphomannomutase. | Glucose-1-phosphate uridylyltransferase. | 0.978 |
algC | glk | Lche_0500 | Lche_0612 | Phosphomannomutase. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.929 |
algC | pgi | Lche_0500 | Lche_1039 | Phosphomannomutase. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.928 |
algC | prs | Lche_0500 | Lche_0457 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.919 |
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