STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pksJ_1Polyketide synthase, type I. (1298 aa)    
Predicted Functional Partners:
Lche_0521
Saframycin Mx1 synthetase B.
 
0.999
Lche_1834
acyl-CoA synthetase.
 
0.999
Lche_2506
acyl-CoA synthetase.
 
0.999
Lche_2715
acyl-CoA synthetase.
  
 0.999
LgrB
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
0.998
PksJ_4
Polyketide synthase.
 
0.997
PksJ_2
Hypothetical protein.
 
0.996
fabD_3
Malonyl CoA-ACP transacylase.
 0.995
Lche_2982
Aminotransferase.
 
 0.995
fabD_1
Malonyl CoA-ACP transacylase.
 0.994
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.