YrrB protein (Legionella cherrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

YrrB

Protein with TPR motifs (protein-protein interaction motif). (562 aa)

Predicted Functional Partners:

yggV

0.842

bcsA

0.705

Lche_0801

0.675

yjeA

0.655

dnaK

0.633

arp_2

0.624

htpG

0.563

ankH

0.546

Lche_0508

0.532

Lche_2865

0.531

Your Current Organism:

Legionella cherrii

NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lche_0508	YrrB	Lche_0508	Lche_0509	Hypothetical protein.	Protein with TPR motifs (protein-protein interaction motif).	0.532
Lche_0508	yggV	Lche_0508	Lche_0510	Hypothetical protein.	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.	0.532
Lche_0801	YrrB	Lche_0801	Lche_0509	Hypothetical protein.	Protein with TPR motifs (protein-protein interaction motif).	0.675
Lche_0801	ankH	Lche_0801	Lche_0237	Hypothetical protein.	Ankyrin repeat-containing protein H.	0.404
Lche_0801	arp_2	Lche_0801	Lche_1042	Hypothetical protein.	Ankyrin repeat protein.	0.404
Lche_0801	dnaK	Lche_0801	Lche_2401	Hypothetical protein.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.906
Lche_0801	htpG	Lche_0801	Lche_1789	Hypothetical protein.	Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.	0.439
Lche_0801	yjeA	Lche_0801	Lche_0965	Hypothetical protein.	Endo-1,4-beta-xylanase.	0.411
Lche_2865	YrrB	Lche_2865	Lche_0509	Coiled-coil protein.	Protein with TPR motifs (protein-protein interaction motif).	0.531
Lche_2865	arp_2	Lche_2865	Lche_1042	Coiled-coil protein.	Ankyrin repeat protein.	0.648
Lche_2865	yjeA	Lche_2865	Lche_0965	Coiled-coil protein.	Endo-1,4-beta-xylanase.	0.618
YrrB	Lche_0508	Lche_0509	Lche_0508	Protein with TPR motifs (protein-protein interaction motif).	Hypothetical protein.	0.532
YrrB	Lche_0801	Lche_0509	Lche_0801	Protein with TPR motifs (protein-protein interaction motif).	Hypothetical protein.	0.675
YrrB	Lche_2865	Lche_0509	Lche_2865	Protein with TPR motifs (protein-protein interaction motif).	Coiled-coil protein.	0.531
YrrB	ankH	Lche_0509	Lche_0237	Protein with TPR motifs (protein-protein interaction motif).	Ankyrin repeat-containing protein H.	0.546
YrrB	arp_2	Lche_0509	Lche_1042	Protein with TPR motifs (protein-protein interaction motif).	Ankyrin repeat protein.	0.624
YrrB	bcsA	Lche_0509	Lche_1044	Protein with TPR motifs (protein-protein interaction motif).	Cellulose synthase catalytic subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.	0.705
YrrB	dnaK	Lche_0509	Lche_2401	Protein with TPR motifs (protein-protein interaction motif).	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.633
YrrB	htpG	Lche_0509	Lche_1789	Protein with TPR motifs (protein-protein interaction motif).	Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.	0.563
YrrB	yggV	Lche_0509	Lche_0510	Protein with TPR motifs (protein-protein interaction motif).	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.	0.842