STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0529Cytokinin oxidase. (459 aa)    
Predicted Functional Partners:
Lche_0530
Hypothetical protein.
 
    0.933
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.737
Kmo
Kynurenine 3-monooxygenase.
  
  
 0.700
SecA_2
Coiled-coil protein.
 
     0.644
ankK
Substrate of the Dot/Icm secretion system.
  
 
   0.565
iraA
Small-molecule methyltransferase IraA.
  
     0.558
AprX
Subtilisin-like serine protease.
  
    0.552
Lche_1230
Putative Acetyltransferase, GNAT family.
 
 
 0.544
Lche_1836
Hypothetical protein.
  
     0.525
Lche_1095
LphB.
 
     0.510
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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