Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cph2_1 | Lche_0533 | Lche_0532 | Lche_0533 | Regulatory protein (GGDEF and EAL domains). | Hypothetical protein. | 0.446 |
Lche_0533 | Cph2_1 | Lche_0533 | Lche_0532 | Hypothetical protein. | Regulatory protein (GGDEF and EAL domains). | 0.446 |
Lche_0533 | Lche_0534 | Lche_0533 | Lche_0534 | Hypothetical protein. | Integral membrane protein (PIN domain superfamily). | 0.466 |
Lche_0533 | Lche_1834 | Lche_0533 | Lche_1834 | Hypothetical protein. | acyl-CoA synthetase. | 0.555 |
Lche_0533 | Lche_2715 | Lche_0533 | Lche_2715 | Hypothetical protein. | acyl-CoA synthetase. | 0.555 |
Lche_0533 | bcp | Lche_0533 | Lche_0649 | Hypothetical protein. | Acetylpolyamine aminohydrolase. | 0.567 |
Lche_0533 | parE | Lche_0533 | Lche_0905 | Hypothetical protein. | Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.400 |
Lche_0533 | pksJ_1 | Lche_0533 | Lche_0504 | Hypothetical protein. | Polyketide synthase, type I. | 0.555 |
Lche_0533 | polA | Lche_0533 | Lche_3025 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.545 |
Lche_0533 | scpA | Lche_0533 | Lche_1713 | Hypothetical protein. | Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.782 |
Lche_0533 | topA | Lche_0533 | Lche_0369 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.411 |
Lche_0534 | Lche_0533 | Lche_0534 | Lche_0533 | Integral membrane protein (PIN domain superfamily). | Hypothetical protein. | 0.466 |
Lche_0534 | bcp | Lche_0534 | Lche_0649 | Integral membrane protein (PIN domain superfamily). | Acetylpolyamine aminohydrolase. | 0.426 |
Lche_1834 | Lche_0533 | Lche_1834 | Lche_0533 | acyl-CoA synthetase. | Hypothetical protein. | 0.555 |
Lche_1834 | Lche_2715 | Lche_1834 | Lche_2715 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.997 |
Lche_1834 | parE | Lche_1834 | Lche_0905 | acyl-CoA synthetase. | Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.503 |
Lche_1834 | pksJ_1 | Lche_1834 | Lche_0504 | acyl-CoA synthetase. | Polyketide synthase, type I. | 0.997 |
Lche_1834 | polA | Lche_1834 | Lche_3025 | acyl-CoA synthetase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.696 |
Lche_1834 | topA | Lche_1834 | Lche_0369 | acyl-CoA synthetase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.697 |
Lche_2715 | Lche_0533 | Lche_2715 | Lche_0533 | acyl-CoA synthetase. | Hypothetical protein. | 0.555 |
page 1 of 3