STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RpfG_1Sensory protein (PAS domain). (844 aa)    
Predicted Functional Partners:
Cph2_5
Regulatory protein (GGDEF and EAL domains).
 
 
 0.891
Cph2_4
Regulatory protein (GGDEF and EAL domains).
 
 
 0.868
Gmr_3
Regulatory protein (GGDEF domain).
 
 
 0.808
DosC
Regulatory protein (GGDEF domain).
 
 
 0.796
Gmr_1
Regulatory protein (GGDEF, EAL, PAS and PAC domains).
 
  
 0.789
Lche_0046
Diguanylate kinase.
 
 
 0.742
Cph2_7
Regulatory protein (GGDEF, PAS, PAC domains).
 
 
 0.741
Cph2_3
Sensory box (GGDEF/EAL domain) regulatory protein.
 
   
 0.731
Cph2_1
Regulatory protein (GGDEF and EAL domains).
 
  
 0.723
pleD
Sensor histidine kinase.
 
 
 0.721
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.