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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0549Hypothetical protein. (959 aa)    
Predicted Functional Partners:
cls
Cardiolipin synthase.
  
    0.780
lspJ
Type II secretory pathway protein LspJ.
  
 
 0.670
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.582
pilB
Pilus assembly protein PilB.
  
 
 0.582
pilC
Pilus assembly protein PilC.
  
  
 0.552
lspF
Type II secretory pathway protein LspF.
  
  
 0.552
Lche_2484
DNA uptake/competence protein ComA.
  
  
 0.532
lspK
Type II secretory pathway protein LspK.
  
 
 0.520
CorA
Magnesium and cobalt transport protein CorA.
       0.486
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.