Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0622Protein IcmS. (114 aa)    
Predicted Functional Partners:
Lche_0626
Protein IcmO (DotL).
   
 
 0.963
icmW
Intracellular multiplication protein IcmW.
    
 
 0.958
lvgA
Virulence protein LvgA.
    
 
 0.955
Lche_0621
IcmT protein.
     
 0.874
Lche_0624
IcmQ protein.
     
 0.871
Lche_0625
IcmP protein.
     
 0.844
icmX
Intracellular multiplication protein IcmX.
      
 0.645
YggR_1
DotB.
     
 0.645
Lche_1729
Phospholipase, patatin family.
    
   0.556
Lche_0623
Hypothetical protein.
       0.513
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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