STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lphALphA (DotK). (185 aa)    
Predicted Functional Partners:
Lche_0631
Protein IcmE (DotG).
 
   0.939
Lche_0630
IcmK protein.
   
   0.852
dotF
Component of the Dot/Icm secretion system.
   
   0.830
icmM
IcmM (DotJ).
     
 0.801
Lche_0629
Protein IcmL (DotI).
     
 0.751
Lche_0633
IcmC (DotE).
       0.704
OprF
Lipoprotein.
  
 
  
0.564
icmD_1
IcmD (DotP).
       0.563
Lche_2838
Putative helicase/relaxase.
 
 
 
 0.534
dotC
Defect in organelle trafficking lipoprotein DotC.
   
 
 0.470
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.