STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dotFComponent of the Dot/Icm secretion system. (282 aa)    
Predicted Functional Partners:
Lche_0631
Protein IcmE (DotG).
   
 
 0.975
Lche_0630
IcmK protein.
   
 
 0.966
lphA
LphA (DotK).
   
 
 0.950
icmM
IcmM (DotJ).
     
 0.916
Lche_0633
IcmC (DotE).
     
 0.866
Lche_0629
Protein IcmL (DotI).
     
 0.858
dotC
Defect in organelle trafficking lipoprotein DotC.
    
 
 0.823
icmX
Intracellular multiplication protein IcmX.
    
 
 0.822
dotD
Lipoprotein DotD.
    
 
 0.822
Lche_0635
IcmJ protein.
     
 0.812
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.