Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0636Protein IcmB (DotO). (1009 aa)    
Predicted Functional Partners:
Lche_0635
IcmJ protein.
 
    0.956
Lche_0631
Protein IcmE (DotG).
 
 
 0.945
Lche_0629
Protein IcmL (DotI).
 
   
 0.927
Lche_0630
IcmK protein.
 
   
 0.918
Lche_0625
IcmP protein.
 
   
 0.911
Lche_0626
Protein IcmO (DotL).
 
  
 0.837
dotC
Defect in organelle trafficking lipoprotein DotC.
 
   
 0.828
Lche_3100
Hypothetical protein.
 
 
 0.788
Lche_0958
IcmL-like protein.
  
     0.757
enhA_2
Enhanced entry protein EnhA.
  
     0.757
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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