STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0645Phage shock protein C, PspC. (70 aa)    
Predicted Functional Partners:
LuxQ_2
Sensory histidine-kinase / response regulator.
   
 
 0.921
ArcB_1
Sensory box histidine kinase/response regulator.
   
 
 0.921
letS
Legionella transmission sensor LetS.
   
 
 0.860
GltT
Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.775
Lche_0647
Hypothetical protein.
       0.458
ArcB_3
Sensory box sensor histidine kinase/response regulator.
   
 
 0.446
CyaB_1
Guanylate/adenylate cyclase.
   
 
 0.430
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.