Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lche_0635 | Lche_0665 | Lche_0635 | Lche_0665 | IcmJ protein. | Hypothetical protein. | 0.750 |
Lche_0635 | Lche_0666 | Lche_0635 | Lche_0666 | IcmJ protein. | Transmembrane protein. | 0.707 |
Lche_0635 | Lche_0957 | Lche_0635 | Lche_0957 | IcmJ protein. | Enhanced entry protein EnhA. | 0.774 |
Lche_0635 | Lche_0958 | Lche_0635 | Lche_0958 | IcmJ protein. | IcmL-like protein. | 0.743 |
Lche_0635 | Lche_1005 | Lche_0635 | Lche_1005 | IcmJ protein. | Hypothetical protein. | 0.774 |
Lche_0635 | Lche_2838 | Lche_0635 | Lche_2838 | IcmJ protein. | Putative helicase/relaxase. | 0.647 |
Lche_0635 | YdgA | Lche_0635 | Lche_0455 | IcmJ protein. | Putative membrane protein YdgA-like protein. | 0.470 |
Lche_0635 | ankH | Lche_0635 | Lche_0237 | IcmJ protein. | Ankyrin repeat-containing protein H. | 0.772 |
Lche_0635 | dotA | Lche_0635 | Lche_0416 | IcmJ protein. | Defect in organelle trafficking protein DotA. | 0.785 |
Lche_0635 | enhA_1 | Lche_0635 | Lche_0761 | IcmJ protein. | Enhanced entry protein EnhA. | 0.774 |
Lche_0665 | Lche_0635 | Lche_0665 | Lche_0635 | Hypothetical protein. | IcmJ protein. | 0.750 |
Lche_0665 | Lche_0666 | Lche_0665 | Lche_0666 | Hypothetical protein. | Transmembrane protein. | 0.849 |
Lche_0665 | Lche_0957 | Lche_0665 | Lche_0957 | Hypothetical protein. | Enhanced entry protein EnhA. | 0.769 |
Lche_0665 | Lche_0958 | Lche_0665 | Lche_0958 | Hypothetical protein. | IcmL-like protein. | 0.746 |
Lche_0665 | Lche_1005 | Lche_0665 | Lche_1005 | Hypothetical protein. | Hypothetical protein. | 0.755 |
Lche_0665 | Lche_2838 | Lche_0665 | Lche_2838 | Hypothetical protein. | Putative helicase/relaxase. | 0.749 |
Lche_0665 | YdgA | Lche_0665 | Lche_0455 | Hypothetical protein. | Putative membrane protein YdgA-like protein. | 0.749 |
Lche_0665 | ankH | Lche_0665 | Lche_0237 | Hypothetical protein. | Ankyrin repeat-containing protein H. | 0.746 |
Lche_0665 | dotA | Lche_0665 | Lche_0416 | Hypothetical protein. | Defect in organelle trafficking protein DotA. | 0.772 |
Lche_0665 | enhA_1 | Lche_0665 | Lche_0761 | Hypothetical protein. | Enhanced entry protein EnhA. | 0.747 |
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