STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0672Type II/III secretion system protein. (247 aa)    
Predicted Functional Partners:
Lche_0992
General secretion pathway protein C.
 
 
 0.862
pilZ_2
Type IV pilus assembly PilZ.
  
     0.767
Lche_1035
DamX-related protein.
 
     0.748
fliH
Polar flagellar assembly protein FliH.
 
  
 0.739
ankK
Substrate of the Dot/Icm secretion system.
  
     0.737
SecA_2
Coiled-coil protein.
  
     0.735
iraA
Small-molecule methyltransferase IraA.
  
     0.731
Lche_0877
GNAT family acetyltransferase.
  
     0.720
Lche_1836
Hypothetical protein.
  
     0.718
Lche_2306
Hypothetical protein.
  
     0.711
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.