Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lche_0696Endonuclease/exonuclease/phosphatase family protein. (252 aa)    
Predicted Functional Partners:
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.615
SufS_1
Aminotransferase class V.
    
   0.615
gshA
Glutamate--cysteine ligase.
 
     0.503
Lche_0695
Lipase LipA (L, pneumophila).
       0.491
Lche_1580
Methyl-transferase.
  
     0.483
OprF
Lipoprotein.
  
  
 0.451
Lche_2934
Putative lipoprotein.
  
    0.447
Lche_2935
Hemolysin, lipoprotein.
  
    0.445
BedC1_1
Choline monooxygenase.
  
     0.423
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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