Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0776Hypothetical protein. (332 aa)    
Predicted Functional Partners:
pepA
Leucine aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
 
 0.746
SpmA
Spore maturation protein A.
       0.746
SpmB
AraC family transcriptional regulator.
       0.746
holC
DNA polymerase III, chi subunit.
  
    0.718
dotA
Defect in organelle trafficking protein DotA.
  
     0.715
Lche_3192
Hypothetical protein.
  
     0.651
Lche_2838
Putative helicase/relaxase.
 
     0.612
Lche_2153
Protein LvrA.
  
     0.609
Lche_0957
Enhanced entry protein EnhA.
  
     0.606
Lche_0665
Hypothetical protein.
  
     0.586
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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