Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traWType-F conjugative transfer system protein. (211 aa)    
Predicted Functional Partners:
traC
F pilus assembly protein TraC.
 
   
 0.948
Lche_0781
Conjugative transfer protein TraB.
 
     0.947
Lche_0782
Conjugative transfer protein.
       0.805
trbI
F pilus extension/retraction protein TrbI Inner membrane protein.
       0.805
Lche_0159
Putative conjugative transfer protein TraU.
 
   
 0.791
Lche_2141
Protein TraU.
 
   
 0.791
Lche_2144
Protein TraC.
 
   
 0.791
Lche_2140
Putative conjugative transfer protein TrbC.
 
     0.789
Lche_0164
Putative conjugative transfer protein TraH.
 
   
 0.785
traH_2
Protein TraH.
 
   
 0.785
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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