STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DapCAspartate aminotransferase. (389 aa)    
Predicted Functional Partners:
lysAC_1
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC).
 
 
 0.715
lysAC_2
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 
 0.710
argF
Ornithine carbamoyltransferase.
 
   
 0.556
ProP_2
Proline/betaine transporter.
       0.538
pksJ_1
Polyketide synthase, type I.
  
 
 0.536
Lche_1834
acyl-CoA synthetase.
  
 
 0.536
Lche_2715
acyl-CoA synthetase.
  
 
 0.536
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
  
 0.464
Lche_2506
acyl-CoA synthetase.
  
  
 0.461
ispB
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.400
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.