STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0849Transmembrane protein. (299 aa)    
Predicted Functional Partners:
Lche_0631
Protein IcmE (DotG).
 
 
   0.804
AraC
AraC family transcriptional regulator.
     
 0.714
Lche_0850
Hypothetical protein.
       0.559
Lche_2415
Zinc-iron permease (ZIP) family metal cation transporter.
  
   0.526
rtcB
Replication factor C subunit (activator I); Belongs to the RtcB family.
       0.514
Lche_2153
Protein LvrA.
  
     0.502
Lche_1022
PAP2 family protein.
  
   0.423
YijE
Transmembrane protein.
 
    0.407
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.