Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AraC | Lche_0849 | Lche_0848 | Lche_0849 | AraC family transcriptional regulator. | Transmembrane protein. | 0.548 |
AraC | Lche_0850 | Lche_0848 | Lche_0850 | AraC family transcriptional regulator. | Hypothetical protein. | 0.410 |
Lche_0335 | Lche_0850 | Lche_0335 | Lche_0850 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.421 |
Lche_0811 | Lche_0850 | Lche_0811 | Lche_0850 | Adenylylsulfate kinase. | Hypothetical protein. | 0.594 |
Lche_0849 | AraC | Lche_0849 | Lche_0848 | Transmembrane protein. | AraC family transcriptional regulator. | 0.548 |
Lche_0849 | Lche_0850 | Lche_0849 | Lche_0850 | Transmembrane protein. | Hypothetical protein. | 0.559 |
Lche_0849 | rtcB | Lche_0849 | Lche_0851 | Transmembrane protein. | Replication factor C subunit (activator I); Belongs to the RtcB family. | 0.514 |
Lche_0850 | AraC | Lche_0850 | Lche_0848 | Hypothetical protein. | AraC family transcriptional regulator. | 0.410 |
Lche_0850 | Lche_0335 | Lche_0850 | Lche_0335 | Hypothetical protein. | Ankyrin repeats (3 copies). | 0.421 |
Lche_0850 | Lche_0811 | Lche_0850 | Lche_0811 | Hypothetical protein. | Adenylylsulfate kinase. | 0.594 |
Lche_0850 | Lche_0849 | Lche_0850 | Lche_0849 | Hypothetical protein. | Transmembrane protein. | 0.559 |
Lche_0850 | cca_1 | Lche_0850 | Lche_0004 | Hypothetical protein. | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.487 |
Lche_0850 | rtcB | Lche_0850 | Lche_0851 | Hypothetical protein. | Replication factor C subunit (activator I); Belongs to the RtcB family. | 0.990 |
cca_1 | Lche_0850 | Lche_0004 | Lche_0850 | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Hypothetical protein. | 0.487 |
rtcB | Lche_0849 | Lche_0851 | Lche_0849 | Replication factor C subunit (activator I); Belongs to the RtcB family. | Transmembrane protein. | 0.514 |
rtcB | Lche_0850 | Lche_0851 | Lche_0850 | Replication factor C subunit (activator I); Belongs to the RtcB family. | Hypothetical protein. | 0.990 |