STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0883Hypothetical protein. (388 aa)    
Predicted Functional Partners:
PcpB
FAD dependent oxidoreductase.
  
   
 0.688
Lche_0885
Hypothetical protein.
       0.596
Lche_0884
Hypothetical protein.
       0.594
Lche_3179
FAD monooxygenase.
  
   
 0.570
Lche_1443
Cytochrome P450.
 
 
 0.526
Lche_1147
Hydrolase.
  
   0.480
pksJ_1
Polyketide synthase, type I.
 
 
 0.476
Lche_0351
5-carboxyvanillate decarboxylase.
 
  
 0.460
AmdA
Amidase.
  
     0.455
Lche_1158
Hypothetical protein.
  
     0.441
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.