STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0899Hypothetical protein; Belongs to the UPF0276 family. (287 aa)    
Predicted Functional Partners:
Lche_0900
Hypothetical protein.
 
  
 0.996
Lche_1675
Signal peptide protein.
 
  
 0.980
Lche_0898
Silver efflux pump.
 
   
 0.914
Lche_0592
Carboxymuconolactone decarboxylase family transporter; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
  
 0.661
lvhB3
Type IV secretion system protein VirB3.
   
    0.642
pacL
Cation efflux transporter.
   
    0.599
Lche_0544
Calcium-transporting ATPase.
   
    0.599
mgtA
Magnesium transporter.
   
    0.599
YceI_1
Putative YceI-like family protein; Belongs to the UPF0312 family.
       0.496
yceI
Polyprenyl-pyrophosphate binding protein; Belongs to the UPF0312 family.
       0.496
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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