STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BedC1_1Choline monooxygenase. (357 aa)    
Predicted Functional Partners:
Lche_2186
Oxidoreductase, FAD-binding protein.
 
  
 0.801
pksJ_1
Polyketide synthase, type I.
  
 
 0.513
Lche_1834
acyl-CoA synthetase.
  
 
 0.513
Lche_2715
acyl-CoA synthetase.
  
 
 0.513
gshA
Glutamate--cysteine ligase.
  
     0.435
Lche_0696
Endonuclease/exonuclease/phosphatase family protein.
  
     0.423
Lche_0701
Hypothetical protein.
  
     0.423
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.