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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0980Opacity protein-like surface antigen. (209 aa)    
Predicted Functional Partners:
Lche_2153
Protein LvrA.
  
     0.732
Lche_2838
Putative helicase/relaxase.
  
 
 
 0.723
dotA
Defect in organelle trafficking protein DotA.
  
    0.691
Lche_2064
Protein-tyrosine phosphatase.
  
     0.690
Lche_0992
General secretion pathway protein C.
  
     0.672
YdgA
Putative membrane protein YdgA-like protein.
 
     0.666
Lche_1692
Hypothetical protein.
  
     0.635
Lche_0631
Protein IcmE (DotG).
  
    0.633
Lche_1932
Ectonucleoside triphosphate diphosphohydrolase.
  
     0.620
Lche_1903
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.607
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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