STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lche_0992General secretion pathway protein C. (167 aa)    
Predicted Functional Partners:
lspD
Type II protein secretion LspD.
 
 
 0.982
Lche_0672
Type II/III secretion system protein.
 
 
 0.914
Lche_1903
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.858
lspK
Type II secretory pathway protein LspK.
 
  
 0.849
EpsM
General secretion pathway protein.
 
   
 0.849
Lche_0993
Sel-1 protein.
 
     0.833
lspJ
Type II secretory pathway protein LspJ.
 
  
 0.819
lspI
Type II secretory pathway protein LspI.
 
  
 0.817
lspH
Type II secretory pathway protein LspH.
 
  
 0.808
Lche_2153
Protein LvrA.
  
     0.687
Your Current Organism:
Legionella cherrii
NCBI taxonomy Id: 28084
Other names: ATCC 35252, CCUG 29666, CIP 103842, DSM 19213, L. cherrii, Legionella cherryi, NCTC 11976, strain ORW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.