Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cc4 | CtaA | Lche_3059 | Lche_0597 | Cytochrome c4. | Cytochrome c oxidase assembly protein. | 0.459 |
Cc4 | coxB | Lche_3059 | Lche_2816 | Cytochrome c4. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.665 |
Cc4 | cyc | Lche_3059 | Lche_1004 | Cytochrome c4. | Cytochrome c5. | 0.764 |
Cc4 | petA | Lche_3059 | Lche_0400 | Cytochrome c4. | Ubiquinol--cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.831 |
Cc4 | petC | Lche_3059 | Lche_0402 | Cytochrome c4. | Ubiquinol-cytochrome c oxydoreductase, cytochrome c1. | 0.855 |
CtaA | Cc4 | Lche_0597 | Lche_3059 | Cytochrome c oxidase assembly protein. | Cytochrome c4. | 0.459 |
CtaA | coxB | Lche_0597 | Lche_2816 | Cytochrome c oxidase assembly protein. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.899 |
CtaA | cyc | Lche_0597 | Lche_1004 | Cytochrome c oxidase assembly protein. | Cytochrome c5. | 0.535 |
CtaA | petA | Lche_0597 | Lche_0400 | Cytochrome c oxidase assembly protein. | Ubiquinol--cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.499 |
CtaA | petC | Lche_0597 | Lche_0402 | Cytochrome c oxidase assembly protein. | Ubiquinol-cytochrome c oxydoreductase, cytochrome c1. | 0.637 |
Lche_0464 | cyc | Lche_0464 | Lche_1004 | Fatty acid desaturase. | Cytochrome c5. | 0.436 |
Lche_1001 | Lche_1002 | Lche_1001 | Lche_1002 | Flagellar biosynthesis/type III secretory pathway chaperone. | Hypothetical protein. | 0.987 |
Lche_1001 | cyc | Lche_1001 | Lche_1004 | Flagellar biosynthesis/type III secretory pathway chaperone. | Cytochrome c5. | 0.417 |
Lche_1001 | flgA | Lche_1001 | Lche_1003 | Flagellar biosynthesis/type III secretory pathway chaperone. | Flagellar basal body P-ring biosynthesis protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. | 0.913 |
Lche_1002 | Lche_1001 | Lche_1002 | Lche_1001 | Hypothetical protein. | Flagellar biosynthesis/type III secretory pathway chaperone. | 0.987 |
Lche_1002 | cyc | Lche_1002 | Lche_1004 | Hypothetical protein. | Cytochrome c5. | 0.433 |
Lche_1002 | flgA | Lche_1002 | Lche_1003 | Hypothetical protein. | Flagellar basal body P-ring biosynthesis protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. | 0.916 |
Lche_1005 | cyc | Lche_1005 | Lche_1004 | Hypothetical protein. | Cytochrome c5. | 0.568 |
Lche_1005 | flgA | Lche_1005 | Lche_1003 | Hypothetical protein. | Flagellar basal body P-ring biosynthesis protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. | 0.461 |
coxB | Cc4 | Lche_2816 | Lche_3059 | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | Cytochrome c4. | 0.665 |
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